MathSBML: a package for manipulating SBML-based biological models
نویسندگان
چکیده
UNLABELLED MathSBML is a Mathematica package designed for manipulating Systems Biology Markup Language (SBML) models. It converts SBML models into Mathematica data structures and provides a platform for manipulating and evaluating these models. Once a model is read by MathSBML, it is fully compatible with standard Mathematica functions such as NDSolve (a differential-algebraic equations solver). MathSBML also provides an application programming interface for viewing, manipulating, running numerical simulations; exporting SBML models; and converting SBML models in to other formats, such as XPP, HTML and FORTRAN. By accessing the full breadth of Mathematica functionality, MathSBML is fully extensible to SBML models of any size or complexity. AVAILABILITY Open Source (LGPL) at http://www.sbml.org and http://www.sf.net/projects/sbml
منابع مشابه
SBML Models and MathSBML
*Corresponding Author: [email protected]; 626-395-8161; Division of Biology and Biological Network Modeling Center, California Institute of Technology, Mail Code 13974, Pasadena, CA, USA Andrew Finney,Ph.D., Physiomics, Inc, Oxford, UK Michael Hucka, Ph.D. Division of Control and Dynamical Systems and Biological Network Modeling Center, California Institute of Technology, Pasadena, CA USA Be...
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ورودعنوان ژورنال:
- Bioinformatics
دوره 20 16 شماره
صفحات -
تاریخ انتشار 2004